Archives 2023 Tue 15 August 2023 HMMER 3.4 release 2019 Mon 11 March 2019 Farrar's striped SIMD Smith/Waterman 2018 Thu 22 November 2018 the first DACA Rhodes Scholar Thu 15 November 2018 mistakes were made Mon 10 September 2018 'tis the season Thu 12 July 2018 Response to Tavares et al., bioRxiv (2018) Wed 13 June 2018 HMMER 3.2.1 Thu 07 June 2018 HMMER 3.2 release Tue 24 April 2018 Graeme Mitchison Tue 17 April 2018 Fall 2018 MCB112 teaching fellows Tue 03 April 2018 Still open bioinformatics position 2017 Sat 16 December 2017 Open bioinformatics position Mon 07 August 2017 Thread count in HMMER3 Wed 26 April 2017 snoscan and squid in the 21st century Sat 28 January 2017 Go sign this. 2016 Thu 15 December 2016 Open position: Bioinformatics scientist Fri 21 October 2016 New open positions Thu 08 September 2016 from zero to python Thu 04 August 2016 open position: lab coordinator Sun 21 February 2016 Biological Data Analysis Sun 24 January 2016 Open software/web engineer positions 2015 Tue 15 December 2015 Our faculty search so far Tue 15 September 2015 New positions opening in the group Sun 23 August 2015 hmmer.org is updating Fri 21 August 2015 Open faculty position in Harvard FAS Systems Biology Tue 02 June 2015 HMMER mission control: we are go for launch vehicle separation(s) Wed 15 April 2015 HMMER 3.1 beta test 2 released 2014 Sat 01 November 2014 High throughput sequencing for neuroscience Mon 13 October 2014 Cryptic genetic variation in software: hunting a buffered 41 year old bug Fri 19 September 2014 Reboot Thu 11 September 2014 Exodi Tue 09 September 2014 Wellcome Trust Computational RNA Biology meeting, 11-13 November 2014 2013 Fri 07 June 2013 Open position: Director, Advanced Computation and Technology group Thu 30 May 2013 HMMER3.1 beta test 1 released 2012 Mon 19 November 2012 Join Rob's HMMER team Thu 15 November 2012 Congratulations Dr. Eddy Mon 24 September 2012 Biological sequence analysis and probabilistic models: 24-27 March 2013 Mon 17 September 2012 St. Louis Sat 08 September 2012 ENCODE says what? Mon 03 September 2012 Dfam: annotation of transposable elements with profile HMMs Sat 30 June 2012 Infernal 1.1: RNA alignment and database search, 10,000x faster Wed 20 June 2012 More domains and motifs Mon 16 April 2012 Interactive, iterative searches using jackhmmer 2011 Sun 04 December 2011 The well-behaved journal Wed 16 November 2011 A roll of the dice? Wed 09 November 2011 Janelia Undergraduate Scholars summer program Mon 17 October 2011 A different view on search results Mon 19 September 2011 HMMER3 is stubborn Wed 31 August 2011 Planned downtime over the weekend Tue 30 August 2011 A computational biologist walks into a museum Sun 28 August 2011 A man for our season Tue 23 August 2011 RNA secondary structure prediction with probability models Fri 27 May 2011 hmmscan vs. hmmsearch speed: the numerology Tue 03 May 2011 Extracting HMMER results to sequence files: Easel miniapplications Mon 14 February 2011 HMMER3 at your (web) service 2010 Thu 30 December 2010 Updated user guide Wed 15 December 2010 In memoriam. Tue 24 August 2010 New position open at Xfam Cambridge Tue 03 August 2010 Select Agents should be defined by DNA sequence Fri 11 June 2010 Departures Mon 03 May 2010 New manuscripts from the lab Sat 01 May 2010 The next five years of computational genomics at NHGRI Fri 30 April 2010 Alex Bateman accepts the 2010 Benjamin Franklin award Sun 28 March 2010 HMMER 3.0 Mon 15 March 2010 Three of many possible reasons why I haven't responded to your email about HMMER. Fri 12 March 2010 Position open at Rfam in Cambridge Tue 09 March 2010 HMMER 3.0rc2: HMMER3's release candidate 2 Tue 02 March 2010 bug #h77: hmmalign corrupts column before an all-delete column Wed 10 February 2010 HMMER 3.0rc1: HMMER3's release candidate 1 Tue 05 January 2010 Search open for new NHGRI Scientific Director 2009 Fri 25 December 2009 A morning in the Ghibli Museum Sun 15 November 2009 HMMER 3.0b3: the final beta test release Sun 01 November 2009 Robert "Daz" Myers, 96. Thu 29 October 2009 Summary of known bugs (so far) in 3.0b2 Mon 12 October 2009 Radio silence: ended Mon 29 June 2009 Teddy bear genomics Sun 21 June 2009 Oopsie. Fri 19 June 2009 Missing fingers. Thu 18 June 2009 Graduation day: HMMER3 beta test (3.0b1) release Wed 29 April 2009 HMMER policy on trademark, copyright, patents, and licensing Mon 06 April 2009 Computational challenges in large-scale sequencing Wed 25 March 2009 Using HMMER2 models with HMMER3: don't do that. Fri 13 March 2009 HMMER 3 alpha test 2 release (3.0a2) Mon 09 March 2009 Computational challenges in the future of large-scale sequencing Tue 03 March 2009 HMMER3 FAQs Wed 11 February 2009 The need for (vector) speed. Mon 19 January 2009 Infernal 1.0 Mon 12 January 2009 HMMER3 alpha test release Wed 07 January 2009 schism Tue 06 January 2009 HMMER3 alpha test release: Monday January 12 2008 Tue 16 December 2008 our secret agent man infiltrates wikipedia. Sun 14 December 2008 HMMER, reloaded